2024 The integron database

The integron database

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WebMar 24, 2024 · IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella Microorganisms. 2024 Mar 24;10 … WebJul 21, 2024 · The integron database is a compact database of both sequences and associated information for 2153 non-redundant whole integrons (Additional file 1: Table …

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WebDec 2, 2011 · Here, these five types of integron associated with mobile elements and carrying a few cassettes mainly encoding antibiotic resistance genes are designated … WebAug 6, 2024 · Yang, Y. et al. ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database. the definition of human development index

INTEGRALL: a database and search engine for integrons, integrases and

WebApr 21, 2009 · This database will help create more accurate annotations of bacterial genomes and facilitate a more representative sample of integron frequency and diversity. … WebPereiraetal.BMCGenomics (2024) 21:495 Page6of14 Fig.4Geneontologyanalysisoftheintegron … WebINTEGRALL provides a public genetic repository for sequence data and nomenclature and offers to scientists an easy and interactive access to integron's DNA sequences, their … the definition of humanity

NOMENCLATURE - INTEGRALL

WebA screening technique for integrons in members of the family Enterobacteriaceae and nonfermenting gram-negative bacteria by real-time PCR is reported. A total of 226 isolates of gram-negative bacteria obtained from a variety of clinical specimens were screened for class 1 integrons by real-time PCR performed on a LightCycler instrument. WebDec 8, 2024 · The GenBank database is designed to provide and encourage access within the scientific community to the most up-to-date and comprehensive DNA sequence information. Therefore, NCBI places no restrictions on … the definition of humbugWebMar 1, 2009 · Abstract. INTEGRALL is a freely available, text-based search system developed with the aim of collecting and organizing information on integrons in a single database. The current release (1.2 ... the definition of humanitarian

"WebApr 21, 2009 · The database has been compiled from a number of sources. The core of these data is manually annotated sequences identified as containing integrons according to the scientific literature [ 10 ]. These sequences were used to compile a … " - The integron database

The integron database

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WebApr 8, 2024 · The IntegronFinder tool [ 29] was used for the detection of integron loci in the draft genome, and the predicted integrons were illustrated with the statistical software R (v3.3.3, R Foundation for Statistical Computing, … WebThe basic structure of an integron consists of an intI gene coding for an integrase, driven by a Pc promoter, and attI, an integron-associated primary recombination site, followed by gene cassettes.

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WebBackground: Integrons are genomic elements that mediate horizontal gene transfer by inserting and removing genetic material using site-specific recombination. Integrons are …

WebJan 4, 2024 · The article “Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid … WebJan 27, 2011 · uploaded into the integron database: Annotation. of Cassette and Integron Data (ACID) (Joss et al., 2009). ACID contains publicly available integron. sequences and users can annotate integron-related.

WebApr 15, 2009 · INTEGRALL aims to be a repository for 20 years of data about integrons. We believe that this database is crucial to congregate information on the phylogeny of the … WebThe integrase encoded by the integron preferentially catalyses two types of recombination reaction: 1) attC x attC, which results in cassette excision, 2) attI x attC, which allows …

WebThe Integron Visualization and Identification Pipeline (I-VIP) is a well-organized pipeline to identify, classify, annotate and visualize class 1 integrons (Fig 1) in complete/draft …

WebThe Integron Database: HOME INTRO LIST SEARCH/BLAST NOMENCLATURE GLOSSARY LINKS CONTACTS ABOUT: Nomenclature of Gene Cassettes. To avoid incorrect naming and the attribution of different names to identical gene cassettes, INTEGRALL suggests the following nomenclature scheme. the definition of hunchWebFeb 7, 2024 · Integrons are bacterial genetic elements notorious for their role in spreading antibiotic resistance in clinical settings. In the natural environment, integrons present a wide and hidden diversity, raising questions as to their broader role in bacterial adaptation. the definition of hothttp://integrall.bio.ua.pt/?intro the definition of human capitalWebIntegrons are genetic systems that allow bacteria to capture and express gene cassettes (Fig.1). They typically consist of an intI gene encoding for an integrase that catalyses the incorporation or excision of gene cassettes by site-specific recombination, a recombination site attI and a promoter responsible for the expression of inserted gene cassettes (for a … the definition of humanitiesWebFIGURE 12.5. Integron Analysis. Integrons are genetic elements that capture and express gene cassettes. The integron has three main components: an integrase gene under the … the definition of hunkeredWebApr 1, 2024 · AMR present in the food chain, crops, animals and environment can be mobilized into bacterial pathogens of humans and animals through horizontal gene transfer and thereby affect human and animal ... the definition of humusWebMar 24, 2024 · IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella Microorganisms. 2024 Mar 24;10 (4):700. doi: 10.3390/microorganisms10040700. Authors Bertrand Néron 1 , Eloi Littner 2 3 4 , Matthieu Haudiquet 2 5 , Amandine Perrin 1 2 4 , Jean Cury 2 6 , Eduardo P C Rocha 2 the definition of humanism